linkfest – 12/07/14

Zigzags on a Shell From Java Are the Oldest Human Engravings“The early human Homo erectus also made the oldest known shell tools half a million years ago.” — see also: The art of Homo erectus“What we can say is that these artifacts carry information about the capabilities of their makers. The few non-perishable marked objects also speak to the likely presence of design in perishable elements of material culture. Clothing, however rudimentary, was likely to have been decorated in some way. Wooden tools were also probably notched and zigzagged — as the occasional bone and ivory implements suggest. They lived for the first time in a world that they could change.” – from john hawks.

Genetic diversity of Sub-Saharan Africa revealed[T]he researchers also found that there were more genetic similarities across Africa than they had thought. Dr Sandhu said: ‘The diversity among populations is not as diverse as we expected it to be….’ The researchers found that many Africans have some Eurasian DNA within their genetic ancestry, which suggests that Eurasians migrated back into Africa many thousands of years after they first left. And several of the populations were descended from the Bantu, a group that spread across Africa about 5,000 years ago.” — see also: The African Genome Variation Project shapes medical genetics in Africa.

and here is dienekes on the above study: African Genome Variation project paper“In too many papers to count, decreasing genetic diversity from East Africa was taken as evidence of an origin of H. sapiens in that locality and its expansion from there to Eurasia. This ‘East Africa=cradle of mankind’ theory has, as far as I can tell, nothing really to stand on. Granted, the oldest anatomically modern human remains have been found in East Africa 200-150 thousand years ago. But, the fact that old sapiens have been found in East Africa and not elsewhere is easily explained by the excellent conditions for preservation (as opposed, e.g., deserts or rainforests of Africa or elsewhere), and by the extraordinary effort by palaeoanthropologists in that area. One also needs to overlook a century of physical anthropology that concluded that East Africa was a contact zone between Caucasoids and Sub-Saharan Africans. We now know that there is no deep lineage of humans in modern east Africans. Take out the Eurasian ancestry and only a paltry Fst=0.027 remains with other Sub-Saharan Africans, a fraction of the Fst between, say, Europeans and East Asians.”

Living African group discovered to be the most populous humans over the last 150,000 years“New genetic research reveals that a small group of hunter-gatherers now living in Southern Africa once was so large that it comprised the majority of living humans during most of the past 150,000 years. Only during the last 22,000 years have the other African ethnicities, including the ones giving rise to Europeans and Asians, become vastly most numerous…. ‘This and previous studies show that the Khoisan peoples and the rest of modern humanity shared their most recent common ancestor approximately 150,000 years ago, so it was entirely unexpected to find that this group apparently did not intermarry with non-Khoisan neighbors for many thousand years….'” — see also The Least Bottlenecked Humans of All from razib.

Ants, altruism and self sacrifice“It’s the selfishness of genes that makes us unselfish…. ‘Group selection’ has always been portrayed as a more politically correct idea, implying that there is an evolutionary tendency to general altruism in people. Gene selection has generally seemed to be more of a right-wing idea, in which individuals are at the mercy of the harsh calculus of the genes. Actually, this folk understanding is about as misleading as it can be. Society is not built on one-sided altruism but on mutually beneficial co-operation. Nearly all the kind things people do in the world are done in the name of enlightened self-interest. Think of the people who sold you coffee, drove your train, even wrote your newspaper today. They were paid to do so but they did things for you (and you for them). Likewise, gene selection clearly drives the evolution of a co-operative instinct in the human breast, and not just towards close kin.” – from matt ridley. — see also: E.O. Wilson’s The Social Conquest of Earth from jason collins. h/t billare!

Genetic Variation in Human DNA Replication Timing“Replication timing, a driver of locus-specific mutation rates, varies among humans…. Replication timing associates with common polymorphisms near replication origins….” – whoa.

Genetic and environmental exposures constrain epigenetic drift over the human life course – h/t casey brown! who tweeted: “Worth repeating: DNA methylation is more genetic than epigenetic.”

IQ is in the genes“How parents raise us has no impact on how smart we become, a new study finds.”

Link discovered between fathers’ criminal history and sons’ intelligence“Sons whose fathers have criminal records tend to have lower cognitive abilities than sons whose fathers have no criminal history, data from over 1 million Swedish men show. The research, conducted by scientists in Sweden and Finland, indicates that the link is not directly caused by fathers’ behavior but is instead explained by genetic factors that are shared by father and son.”

Are bright people normal?“‘We found no support for the genetic Discontinuity Hypothesis that nonadditive genetic variance is greater for high intelligence….'” – from dr. james thompson.

Booze culture may date back 10 million years say scientists“A new study suggests that primates may have begun drinking alchol 10 million years ago, as fermented fruit on the forest floor…. Experts at Santa Fe College in the US studied the gene ADH4 which produces an enzyme to break down alcohol in the body. It was hypothesised that the enzyme would not appear until the first alcohol was produced by early farmers. But scientists were amazed to find it 10 million years earlier, at the end of the Miocene epoch.” – (them’s *my* ancestors right there! (~_^) )

Psychiatry: End of the Road for “Endophenotypes”?“In a nutshell, the researchers ran seven different genetic studies to try to find the genetic basis of a total of seventeen neurobehavioural traits, also known as ‘endophenotypes’…. Essentially an endophenotype is some trait, which could be almost anything, which is supposed to be related to (or part of) a psychiatric disorder or symptom, but which is ‘closer to genetics’ or ‘more biologica’ than the disorder itself. Rather than thousands of genes all mixed together to determine the risk of a psychiatric disorder, each endophenotype might be controlled by only a handful of genes – which would thus be easier to find…. Over 89% of the searches came up null in this way; for eight of the seventeen traits, the researchers found no associated genes using *any* strategy.” – from neuroskeptic.

Unequal fates for maths superstars“The fates of US child prodigies of the 1970s reveal great accomplishments but strong gender differences…. [B]oth genders reported unusually high levels of satisfaction with their lives and careers. ‘It seems that both sexes got what they wanted from life, even if those things were somewhat different….'” – h/t charles! – see also: Sometimes men and women want different things from ben southwood.

Are Chinese babies more docile? – peter frost on the freedman studies.

Inferior Faunas – from greg cochran.

Transparency International’s Corruption Perceptions Index 2014 released this week.

Domestication and Human Evolution Symposium @getCARTA sessions now available to watch online.

Does evolution need a revolution? – from jerry coyne.

Experimentally induced innovations lead to persistent culture via conformity in wild birds – birds have culture.

A Magisterial Synthesis Of Apes And Human Evolution“[Russell H.] Tuttle’s tome is a grand synthesis of all the latest research and data about apes and their relation to us…. He believes that bipedalism preceded the development of the brain in early humans –and was likely something inherited from smaller apes already used to using their feet to move laterally along branches in trees. Although chimpanzees and bonobos are our closest relatives on the evolutionary tree, they do not represent in their own locomotion good proto-models of what led to human upright posture and walking.”

‘Superbugs’ Kill India’s Babies and Pose an Overseas Threat“A growing chorus of researchers say the evidence is now overwhelming that a significant share of the bacteria present in India — in its water, sewage, animals, soil and even its mothers — are immune to nearly all antibiotics.” – h/t razib!

The RNA World: molecular cooperation at the origins of life“The RNA World concept posits that there was a period of time in primitive Earth’s history — about 4 billion years ago — when the primary living substance was RNA or something chemically similar. In the past 50 years, this idea has gone from speculation to a prevailing idea. In this Review, we summarize the key logic behind the RNA World and describe some of the most important recent advances that have been made to support and expand this logic. We also discuss the ways in which molecular cooperation involving RNAs would facilitate the emergence and early evolution of life.”

Tool to edit DNA revolutionizing research in Boston area – CRISPR.

Thomas Docherty on academic freedom“Managerial fundamentalism has taken hold in universities, with scholars viewed as resources that must be controlled…. A creeping incremental assault on academic freedom threatens not just what can be spoken aloud, but also what it is permissible to think: thought itself is to be subjected to management, so that its critical power is neutered or constrained….”

The Dark Enlightenment for Newbies“So what is dark about the Dark Enlightenment? Absolutely nothing. The Dark Enlightenment only looks dark in contrast to the blinding (as in, it blinds you) optimism of flash in the pan of blank slate equalism. The things that the DE contend about human nature — that parents naturally favor their children, that sexual attraction is a biological phenomenon, that some people are naturally smarter than others — were all accepted as common sense for most or all of human history. It is the unrealistic utopianism of modern liberalism which is ridiculously absurd. The Dark Enlightenment might be better termed The Return to Normalcy. So the phrase “Dark Enlightenment” might not be the best, but it has received enough attention that I don’t think we should abandon it.” – very nice post from empedocles.

Tanzania evicting 40,000 people from homeland to make room for Dubai royal family“It will become a private hunting reserve” – =/ (i’m linking to salon!) – h/t john durant!

bonus: Why Some Mosquitoes Spread Malaria and Others Don’t“Sequencing the genomes of numerous Anopheles mosquito species from locations around the world has shown why some can carry and spread the deadly disease malaria while others don’t.” – h/t srikant mantri!

bonus bonus: Humpback Whales in the Arabian Sea Have Been Isolated for 70,000 Years

bonus bonus bonus: A diet to die for“One bird feasts on food that would leave most other animals stone dead.”

bonus bonus bonus bonus: Insect Swarms Go Critical“Scientists have found tantalizing evidence that diverse biological systems, including the human brain, gene expression networks, bird flocks, and fish schools, behave as though they are near the ‘critical point’ of a phase transition, like correlated spins in a magnet on the verge of ordering.” – h/t jayman!

bonus bonus bonus bonus bonus: Weird Physics Can Make an Invisible Cat Visible“These cat pictures are brought to you by quantum entanglement as discussed by Einstein and Schrödinger.”

bonus bonus bonus bonus bonus bonus: “The Feynman Lectures on Physics”, The Most Popular Physics Book Ever Written, Now Completely Online

bonus bonus bonus bonus bonus bonus bonus: Tette per la Scienza – boobies! (it really IS this time! (~_^) )

(note: comments do not require an email. quantum cats!)

linkfest – 02/24/14

Your Ancestors, Your Fate“The notion of genetic transmission of ‘social competence’ — some mysterious mix of drive and ability — may unsettle us. But studies of adoption, in some ways the most dramatic of social interventions, support this view. A number of studies of adopted children in the United States and Nordic countries show convincingly that their life chances are more strongly predicted from their biological parents than their adoptive families. In America, for example, the I.Q. of adopted children correlates with their adoptive parents’ when they are young, but the correlation is close to zero by adulthood. There is a low correlation between the incomes and educational attainment of adopted children and those of their adoptive parents. These studies, along with studies of correlations across various types of siblings (identical twins, fraternal twins, half siblings) suggest that genetics is the main carrier of social status.” – from gregory clark. see also The Son Also Rises: Surnames and the History of Social Mobility.

Reductionism! Determinism! Straw-man-ism!” The main problem, it seems to me, is a fundamental misunderstanding of what genetics as a science studies and how it relates to the function of complex systems. The following statements are not contradictory: 1. The function of a complex system emerges from the complex and dynamic interactions between all of the components of the system, in a context- and experience-dependent manner. 2. Variation in single components of the system (or in multiple components) can affect how it functions. Geneticists investigate the second question. Showing that variation in Gene X affects the behaviour or outcome of a system is not the same as saying that Gene X fully determines that behaviour or fully accounts for the entire system. Gene X is just a piece of DNA sitting in a cell somewhere – it doesn’t do anything by itself. But a *difference* in Gene X can account for a *difference* in how the system works. – from kevin mitchell.

The Problem with HBD, the Dark Enlightenment, Neoreaction, Alt-Rightism, and All That Jazz – READ THIS! – from jayman (and misdreavus).

There’s nothing wrong with looking for ‘gay genes’“The Left loves to tell the Right that it’s anti-science, pointing (not without reason) to the correlation between conservative beliefs and a failure to come to terms with the scientific facts of evolution and human-caused climate change. But there’s a subtler tendency on the Left; a fear of research into human nature, in case the findings are in some way politically uncomfortable.”

Evolution equally efficient in removing deleterious variants in Europeans and West Africans“…but apparently not in Denisovans who accumulated deleterious mutations at a higher rate than modern humans.” – @dienekes’.

Scientists unlock a ‘microbial Pompeii’“An international team of researchers have discovered a ‘microbial Pompeii’ preserved on the teeth of skeletons around 1,000 years old. The key to the discovery is the dental calculus (plaque) which preserves bacteria and microscopic particles of food on the surfaces of teeth, effectively creating a mineral tomb for microbiomes.”

The effect of paternal age on offspring intelligence and personality when controlling for paternal trait level [pdf] – “We examined the effect of father’s age at birth on offspring intelligence, head circumference and personality traits. Using the Minnesota Twin Family Study sample we tested paternal age effects while controlling for parents’ trait levels measured with the same precision as offspring’s. From evolutionary genetic considerations we predicted a negative effect of paternal age on offspring intelligence, but not on other traits. Controlling for parental intelligence (IQ) had the effect of turning an initially positive association non-significantly negative. We found paternal age effects on offspring IQ and Multidimensional Personality Questionnaire Absorption, but they were not robustly significant, nor replicable with additional covariates. No other noteworthy effects were found.” – from lars penke.

Reversed hierarchy in the brain for general and specific cognitive abilities: A morphometric analysis“Here, we analyze gray matter with three morphometric indices (volume, cortical surface area, and cortical thickness) at three levels of the intelligence hierarchy (tests, first-order factors, and a higher-order general factor, g)…. The key finding reveals substantial variability in gray matter correlates at the test level, which is substantially reduced for the first-order and the higher-order factors. This supports a reversed hierarchy in the brain with respect to cognitive abilities at different psychometric levels: the greater the generality, the smaller the number of relevant gray matter clusters accounting for individual differences in intelligent performance.” – h/t ben southwood!

A nice bunch of flowers“The general factor of intelligence is strongest at lower levels of intelligence. It may be a case of ‘All neurones to the pump’. When abilities are low, most problems are difficult. In such cases, all resources have to be thrown at the problem. When abilities are higher there is more spare capacity for differentiation of abilities. Brighter persons have a lower proportion of their abilities accounted for by a common factor, even though the have higher absolute abilities.” – from dr. james thompson.

GED scores by Ethnicity and Nation – from chuck @human varieties.

The Unfortunately Innate Nature of Intelligence“You cannot blame people for being what they were born, and you cannot expect them to do what they cannot.”

Psychologist on a mission to give every child a learning chip“Prof Robert Plomin wants educators to take notice of genes, and has a new big idea – personalised learning.”

Fruit-loving lemurs score higher on spatial memory tests“Food-finding tests in five lemur species show that fruit-eaters may have better spatial memory than lemurs with a more varied diet. The results support the idea that relying on foods that are seasonally available and far-flung gives a competitive edge to individuals with certain cognitive abilities — such as remembering where the goodies are.”

What Does Our DNA Say About How We Look?“A biologist aims to profile suspects from genetic material left at crime scenes.’ – h/t matthew wygant!

Four Lame Responses to Sam Harris’ Moral Landscape Challenge“Moral emotions, like every other evolved trait, exist because their presence increased the probability that the genes responsible for the existence of those traits would survive and reproduce. Moral emotions, and the associated illusions of the existence of Good and Evil as things in themselves, exist as subjective impressions in the minds of individuals.” – from helian.

Free will beliefs and motivation to punish“In a paper forthcoming in the Journal of Personality and Social Psychology, Cory J. Clark and co-authors provide evidence that widespread belief in the existence of free will is bolstered by a fundamental desire to punish wrongdoers…. As Clark et al. put it, ‘There seems little doubt that the subjective experience of choosing and acting supports people’s belief in free will, but our findings suggest another powerful motivating factor: the human impulse to blame and punish. People believe in free will – at least in part – because they wish to affirm that people who do immoral things could have and should have acted differently’.”

A small contribution to the free-will thingy – from elijah.

Is there a ‘dark intelligence’? Emotional intelligence is used by dark personalities to emotionally manipulate others“Narcissism and psychopathy increased link between emotional intelligence facets and emotional manipulation.” – h/t claire lehmann!

Theory of mind: did evolution fool us?“Although sophisticated ToM is believed to have high adaptive fitness, broad experimental evidence from behavioural economics, experimental psychology and linguistics point towards limited recursivity in representing other’s beliefs.” – h/t neuroskeptic!

Creativity and personality in classical, jazz and folk musicians“[J]azz musicians are more frequently engaged in extracurricular musical activities, and also complete a higher number of creative musical achievements. Additionally, jazz musicians show higher ideational creativity as measured by divergent thinking tasks, and tend to be more open to new experiences than classical musicians. This study provides first empirical evidence that jazz musicians show particularly high creativity with respect to domain-specific musical accomplishments but also in terms of domain-general indicators of divergent thinking ability that may be relevant for musical improvisation.” – h/t mary louise cowan!

Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa“In this study, we analyze complete mtDNA genome sequences from over 900 Bantu-speaking individuals from Angola, Zambia, Namibia, and Botswana to investigate the demographic processes at play during the last stages of the Bantu expansion. Our results show that most of these Bantu-speaking populations are genetically very homogenous, with no genetic division between speakers of Eastern and Western Bantu languages. Most of the mtDNA diversity in our dataset is due to different degrees of admixture with autochthonous populations.”

Silver Blaze“[I]n most parts of Europe, it looks as if modern populations inherited the three EEF/WHG/ANE groups (Levantine farmers, West Hunters and Sibermen) via only two proximate ancestral populations. Europe at the time was almost entirely occupied by Sardinian-like farmers – then another population moved in, one that had about 3 times as much West Hunter as Sibermen.” – from greg cochran.

Replacement or continuity?“Ancient DNA seems to promise a clearer picture because the only source of uncertainty is the age of the skeletal material. Unfortunately, this new method is more sensitive to uncertainty from another source: natural selection. Late hunter-gatherers and early farmers had to adapt to different environments. There certainly was a genetic divide between the two, but did it result from differences in origin or from differences in natural selection?” – from peter frost.

Dystopian diversity – from the awesome epigone.

“I regret studying social anthropology” – me, too. *sigh* – see also the original post.

The parasite that escaped out of Africa: Tracing origins of malaria parasite“An international team has traced the origin of the second-worst malaria parasite of humans to Africa. The closest genetic relatives of human *Plasmodium vivax* were found only in Asian macaques, leading researchers to believe that *P. vivax* originated in Asia. This study overturns that, finding that wild-living apes in central Africa are widely infected with parasites that, genetically, are nearly identical to human *P. vivax*.” – h/t hbd bibliography!

Are Rich People Really That Selfish? – New Queendom.com Study Looks At Impact of Socio-Economic Status on Altruistic Tendencies“‘Our personality impacts every aspect of our life – the choices we make, the people we surround ourselves with, the career we pursue, the way we respond to life experiences, the way we manage our finances, and whether or not we share our good fortune,’ explains Dr. Jerabek, president of the company…. [H]ow individuals conduct themselves when they have money has everything to do with who they are as a person. Money doesn’t make a person more or less selfish. If you are a genuinely kind and giving person, you’ll continue to be that way no matter how many zeros are on your paycheck.'”

Babies born in England and Wales to non-UK born mothers infographic“Total Fertility Rate in England/Wales by where mother born: 4.3 Afghanistan, 3.8 Pakistan, 3.3 Nigeria, 2.4 India, 1.8 UK.”

The Tale of a CRISPR Clone – from razib.

Graft Probe in Scientific Community Widens in Southern China“A corruption probe has so far snared more than 50 scientists and research administrators in Guangdong, one of China’s wealthiest provinces.”

Quick Winter Olympics Digit Ratio Note – from sisyphean the mad contrarian.

Scientist proposes revolutionary naming system for all life on Earth“…a naming convention based on genome sequencing to enhance the way organisms are classified.” – h/t super mario!

Burials uncovered in Ireland reflect fusion of Paganism and Christianity“Excavations at Caherconnell in County Clare, Ireland, have uncovered ancient burials that reflect a fusion of Pagan practices with Christianity. Although it was initially believed that Christianity was well established in Ireland by the 5th Century, the latest finding reveals that Celtic Paganism was not quick to die out.” – h/t derek hopper!

The Society of Mutual Autopsy“The Society of Mutual Autopsy was an organisation formed in the late 1800s to advance neuroscience by examining dead members’ brains and to promote atheism by breaking sacred taboos.”

Heavy metal bands per 100,000 people – global map.

A Campus More Colorful Than Reality: Beware That College Brochure – h/t conrad hackett! who tweeted: “The whiter the college, the more diversity depicted in the brochures.”

bonus: Confirmed: Oldest Fragment of Early Earth is 4.4 Billion Years Old

bonus bonus: Hubble Finds Possible Oldest Object Ever Seen“The Hubble Telescope’s new set of Frontier Fields images includes a galaxy some 13-billion light-years away, which makes it a candidate for the most distant object ever seen.”

bonus bonus bonus: Rust Cohle, Guidance Counselor – heh. (~_^)

(note: comments do not require an email. rust cohle for president!)

linkfest – 05/19/13

J.P. Rushton’s theory of ethnic nepotism [pdf] – “Ethnic nepotism due to similarity is a weak social force compared to social identity. However its pervasiveness makes it a potential driver of evolutionary and social change, a potential borne out by sociological studies of the impact of ethnic diversity on social cohesion and public altruism. Genomics confirms the theory for interactions within populations with sufficient genetic diversity, such as ethnically mixed societies. GST [genetic similarity theory] applied to ethnicity is promising for further research in evolutionary social science because it unifies evolutionary and behavioral mechanisms in a single theory.” – from salter and harpending. h/t hbd bibliography!

Tibet – looks like selection for adaptations to high-altitude living in tibetans started waaaay back. – from greg cochran. see also: The genome sequence of Tibetan antelope sheds new light on high-altitude adaptation.

The Connection Between Tipping and Corruption (and Tribalism)“[C]ountries in which tipping is common are more corrupt than others, according to the Corruptions Perceptions Index (CPI).” – from staffan – h/t jayman!

Corruption influences migration of skilled workers“Countries that have higher levels of corruption struggle to attract and retain skilled workers….”

A fascinating map of the world’s most and least racially tolerant countries“Anglo and Latin countries most tolerant…. India, Jordan and Hong Kong by far the least tolerant…. The Middle East not so tolerant…. Racial tolerance low in diverse Asian countries…. Pakistan, remarkably tolerant, also an outlier.” – h/t nelson!

The Call of the Clan“Why ancient kinship and tribal affiliation still matter in a world of global geopolitics.”mark weiner in foreign policy.

The Ancestral Logic of Politics: Upper-Body Strength Regulates Men’s Assertion of Self-Interest Over Economic Redistribution“In studies conducted in Argentina, Denmark, and the United States, men with greater upper-body strength more strongly endorsed the self-beneficial position: Among men of lower socioeconomic status (SES), strength predicted increased support for redistribution; among men of higher SES, strength predicted increased opposition to redistribution.”

High-Testosterone Competitors More Likely to Choose Red“[M]ales who chose red as their color in a competitive task had higher testosterone levels than other males who chose blue.”

Complex Societies before Agriculture: Göbekli Tepe – from peter turchin.

Why Humans Took Up Farming: They Like To Own Stuff – hmmmm.

New discovery of ancient diet shatters conventional ideas of how agriculture emerged“[P]eople living in Xincun [southern subtropical china] 5,000 years ago may have practised agriculture –before the arrival of domesticated rice in the region.”

“More Genomes From Denisova Cave Show Mixing of Early Human Groups” – @race/history/evolution notes.

Geoffrey Miller: ‘Why the seduction crowd picked up on my work’ – ’cause it works? (~_^)

The evolution of lying.

‘Overspending Has Become a Modern Form of Mating Deception’“Living beyond one’s means can make dating easier, but it leads to problems as a relationship gets more serious.” – h/t geoffrey miller.

“Nice guys finish last.” Really? What does the research say? – from barking up the wrong tree.

Company creates DNA test that reveals whether you carry the redhead gene – (^_^)

bonus: In Defense of Jason Richwine“His resignation is emblematic of a corruption that has spread throughout American intellectual discourse.” – charles murray is sick of it. me, too!

bonus bonus: Malaria Infected Mosquitoes Express Enhanced Attraction to Human Odor – more miiiind control!

bonus bonus bonus: Water bubbling deep in Canadian mine may be oldest on Earth“A reservoir deep underground in Canada holds water that may be 1 billion years old, possibly the oldest water on Earth, researchers say.”

bonus bonus bonus bonus: Unusual Offshore Octopods: The See-Through “Glass” Octopus [Video]

(note: comments do not require an email. glass octopus!)